There's a lot of stuff going on in your photos but I can't see it. (My paint is fine.)
I'd take it to two different body shops, and pay for them to write up an evaluation, and turn that over to corporate.
You can assume that the power supply to the Qi charger is 12 volts and that the charger changes the voltage to 5 or 9 volts or perhaps something else. So... you'd have to find a proper regulator to change the voltage for your MagSafe charger, which I think is probably 5 volts.
Well, I sure don't know why the system would throw out that light, but modern trucks do odd things when something is amiss.
Did you run the steps several times before trying to start the truck? That could have run the voltage down. I'd test the 12-volt battery's voltage and top it off if it's...
You don't lift the bed rail. You drill a hole through the bed, just below the rail, and go in from there. Wiring the third brake light is a fifteen-minute job.
I'm a retired LEO. Six bits say this kid wasn't looking to steal the truck. He was looking for cigarettes or something else of value to him. That's what 95% of the auto burglaries were about in my hometown. Kids looking for cigarettes.
What I have read about this with Toyota suggests that the...